PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028753.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 203aa    MW: 21901.6 Da    PI: 8.2822
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028753.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.5e-41121111100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++++
  HL.SW.v1.0.G028753.1  12 SCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMAE 100
                           6**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+++la ++++
  HL.SW.v1.0.G028753.1 101 LQHDLAFARAR 111
                           *****998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.37811112IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4012109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKGGHEPRAS SSCAACKFLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILIEV  60
PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMAE LQHDLAFARA RLARFAAHSS  120
SSSSSSSSSY SSSSSSFSYG AILDGRLITE AAAFSGLPSA NCAGLSSGLI TTDHQALNSQ  180
SSFEFCQNNS VYHDFSFVPY IL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272821.16e-77PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL81e-64LBD21_ARATH; LOB domain-containing protein 21
TrEMBLD7T4L77e-77D7T4L7_VITVI; Putative uncharacterized protein
STRINGVIT_13s0067g01450.t012e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.14e-60LOB domain-containing protein 21